* rseq 5.39 rsequence calculated from encoded sequences from: * encode 1.41; encoding of sequences in * * 2003/11/18 21:35:49, 1995/12/04 06:41:55, t7.symmetry * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -50 50 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -50 9 7 10 8 -0.05286 -0.05286 2.8728e-03 2.8728e-03 34 1.93460 e -49 11 6 7 10 -0.02244 -0.07530 2.8728e-03 5.7456e-03 34 1.93460 e -48 8 12 8 6 -0.01965 -0.09495 2.8728e-03 8.6185e-03 34 1.93460 e -47 10 4 7 13 0.05233 -0.04262 2.8728e-03 1.1491e-02 34 1.93460 e -46 11 5 8 10 -0.00925 -0.05187 2.8728e-03 1.4364e-02 34 1.93460 e -45 17 6 4 7 0.16032 0.10844 2.8728e-03 1.7237e-02 34 1.93460 e -44 14 3 5 12 0.16146 0.26991 2.8728e-03 2.0110e-02 34 1.93460 e -43 11 6 5 12 0.02928 0.29918 2.8728e-03 2.2983e-02 34 1.93460 e -42 5 10 6 13 0.03668 0.33586 2.8728e-03 2.5855e-02 34 1.93460 e -41 10 4 12 8 0.03063 0.36649 2.8728e-03 2.8728e-02 34 1.93460 e -40 12 6 6 10 0.00180 0.36829 2.8728e-03 3.1601e-02 34 1.93460 e -39 10 4 7 13 0.05233 0.42062 2.8728e-03 3.4474e-02 34 1.93460 e -38 8 14 5 7 0.04020 0.46082 2.8728e-03 3.7347e-02 34 1.93460 e -37 12 6 4 12 0.06916 0.52998 2.8728e-03 4.0220e-02 34 1.93460 e -36 10 4 8 12 0.03063 0.56061 2.8728e-03 4.3092e-02 34 1.93460 e -35 7 7 9 11 -0.03857 0.52205 2.8728e-03 4.5965e-02 34 1.93460 e -34 14 5 4 11 0.11085 0.63290 2.8728e-03 4.8838e-02 34 1.93460 e -33 9 10 5 10 -0.01823 0.61467 2.8728e-03 5.1711e-02 34 1.93460 e -32 9 6 6 13 0.01345 0.62812 2.8728e-03 5.4584e-02 34 1.93460 e -31 8 6 8 12 -0.01965 0.60847 2.8728e-03 5.7456e-02 34 1.93460 e -30 5 9 8 12 -0.00114 0.60733 2.8728e-03 6.0329e-02 34 1.93460 e -29 7 8 7 12 -0.02573 0.58160 2.8728e-03 6.3202e-02 34 1.93460 e -28 9 4 8 13 0.04229 0.62389 2.8728e-03 6.6075e-02 34 1.93460 e -27 11 5 6 12 0.02928 0.65317 2.8728e-03 6.8948e-02 34 1.93460 e -26 10 7 10 7 -0.04282 0.61035 2.8728e-03 7.1821e-02 34 1.93460 e -25 11 6 8 9 -0.03248 0.57786 2.8728e-03 7.4693e-02 34 1.93460 e -24 12 4 10 8 0.03063 0.60850 2.8728e-03 7.7566e-02 34 1.93460 e -23 12 6 11 5 0.02928 0.63777 2.8728e-03 8.0439e-02 34 1.93460 e -22 6 10 10 8 -0.03673 0.60104 2.8728e-03 8.3312e-02 34 1.93460 e -21 5 8 8 13 0.01524 0.61627 2.8728e-03 8.6185e-02 34 1.93460 e -20 4 15 8 7 0.08993 0.70620 2.8728e-03 8.9058e-02 34 1.93460 e -19 8 5 9 12 -0.00114 0.70506 2.8728e-03 9.1930e-02 34 1.93460 e -18 16 7 5 6 0.10511 0.81017 2.8728e-03 9.4803e-02 34 1.93460 e -17 20 4 4 6 0.31621 1.12637 2.8728e-03 9.7676e-02 34 1.93460 e -16 16 6 4 8 0.12684 1.25321 2.8728e-03 1.0055e-01 34 1.93460 e -15 8 8 5 13 0.01524 1.26844 2.8728e-03 1.0342e-01 34 1.93460 e -14 4 4 8 18 0.23122 1.49966 2.8728e-03 1.0629e-01 34 1.93460 e -13 20 3 4 7 0.34258 1.84224 2.8728e-03 1.0917e-01 34 1.93460 e -12 20 2 4 8 0.38945 2.23169 2.8728e-03 1.1204e-01 34 1.93460 e -11 3 3 6 22 0.46852 2.70021 2.8728e-03 1.1491e-01 34 1.93460 e -10 19 3 3 9 0.33978 3.03998 2.8728e-03 1.1779e-01 34 1.93460 e -9 2 18 9 5 0.29413 3.33411 2.8728e-03 1.2066e-01 34 1.93460 e -8 3 5 20 6 0.32693 3.66104 2.8728e-03 1.2353e-01 34 1.93460 e -7 19 0 2 13 0.69468 4.35571 2.8728e-03 1.2640e-01 34 1.93460 e -6 0 28 1 5 1.14760 5.50331 2.8728e-03 1.2928e-01 34 1.93460 e -5 0 7 0 27 1.20106 6.70437 2.8728e-03 1.3215e-01 34 1.93460 e -4 0 29 0 5 1.33217 8.03654 2.8728e-03 1.3502e-01 34 1.93460 e -3 17 15 0 2 0.67332 8.70986 2.8728e-03 1.3790e-01 34 1.93460 e -2 0 31 1 2 1.42302 10.13289 2.8728e-03 1.4077e-01 34 1.93460 e -1 1 0 0 33 1.74317 11.87605 2.8728e-03 1.4364e-01 34 1.93460 e 0 29 0 0 5 1.33217 13.20822 2.8728e-03 1.4651e-01 34 1.93460 e 1 5 0 0 29 1.33217 14.54039 2.8728e-03 1.4939e-01 34 1.93460 e 2 33 0 0 1 1.74317 16.28356 2.8728e-03 1.5226e-01 34 1.93460 e 3 2 1 31 0 1.42302 17.70658 2.8728e-03 1.5513e-01 34 1.93460 e 4 2 0 15 17 0.67332 18.37990 2.8728e-03 1.5801e-01 34 1.93460 e 5 5 0 29 0 1.33217 19.71207 2.8728e-03 1.6088e-01 34 1.93460 e 6 27 0 7 0 1.20106 20.91314 2.8728e-03 1.6375e-01 34 1.93460 e 7 5 1 28 0 1.14760 22.06073 2.8728e-03 1.6662e-01 34 1.93460 e 8 13 2 0 19 0.69468 22.75541 2.8728e-03 1.6950e-01 34 1.93460 e 9 6 20 5 3 0.32693 23.08234 2.8728e-03 1.7237e-01 34 1.93460 e 10 5 9 18 2 0.29413 23.37646 2.8728e-03 1.7524e-01 34 1.93460 e 11 9 3 3 19 0.33978 23.71624 2.8728e-03 1.7812e-01 34 1.93460 e 12 22 6 3 3 0.46852 24.18476 2.8728e-03 1.8099e-01 34 1.93460 e 13 8 4 2 20 0.38945 24.57421 2.8728e-03 1.8386e-01 34 1.93460 e 14 7 4 3 20 0.34258 24.91679 2.8728e-03 1.8673e-01 34 1.93460 e 15 18 8 4 4 0.23122 25.14800 2.8728e-03 1.8961e-01 34 1.93460 e 16 13 5 8 8 0.01524 25.16324 2.8728e-03 1.9248e-01 34 1.93460 e 17 8 4 6 16 0.12684 25.29007 2.8728e-03 1.9535e-01 34 1.93460 e 18 6 4 4 20 0.31621 25.60628 2.8728e-03 1.9822e-01 34 1.93460 e 19 6 5 7 16 0.10511 25.71139 2.8728e-03 2.0110e-01 34 1.93460 e 20 12 9 5 8 -0.00114 25.71025 2.8728e-03 2.0397e-01 34 1.93460 e 21 7 8 15 4 0.08993 25.80017 2.8728e-03 2.0684e-01 34 1.93460 e 22 13 8 8 5 0.01524 25.81541 2.8728e-03 2.0972e-01 34 1.93460 e 23 8 10 10 6 -0.03673 25.77867 2.8728e-03 2.1259e-01 34 1.93460 e 24 5 11 6 12 0.02928 25.80795 2.8728e-03 2.1546e-01 34 1.93460 e 25 8 10 4 12 0.03063 25.83858 2.8728e-03 2.1833e-01 34 1.93460 e 26 9 8 6 11 -0.03248 25.80610 2.8728e-03 2.2121e-01 34 1.93460 e 27 7 10 7 10 -0.04282 25.76328 2.8728e-03 2.2408e-01 34 1.93460 e 28 12 6 5 11 0.02928 25.79256 2.8728e-03 2.2695e-01 34 1.93460 e 29 13 8 4 9 0.04229 25.83484 2.8728e-03 2.2983e-01 34 1.93460 e 30 12 7 8 7 -0.02573 25.80911 2.8728e-03 2.3270e-01 34 1.93460 e 31 12 8 9 5 -0.00114 25.80797 2.8728e-03 2.3557e-01 34 1.93460 e 32 12 8 6 8 -0.01965 25.78833 2.8728e-03 2.3844e-01 34 1.93460 e 33 13 6 6 9 0.01345 25.80178 2.8728e-03 2.4132e-01 34 1.93460 e 34 10 5 10 9 -0.01823 25.78355 2.8728e-03 2.4419e-01 34 1.93460 e 35 11 4 5 14 0.11085 25.89440 2.8728e-03 2.4706e-01 34 1.93460 e 36 11 9 7 7 -0.03857 25.85583 2.8728e-03 2.4994e-01 34 1.93460 e 37 12 8 4 10 0.03063 25.88647 2.8728e-03 2.5281e-01 34 1.93460 e 38 12 4 6 12 0.06916 25.95563 2.8728e-03 2.5568e-01 34 1.93460 e 39 7 5 14 8 0.04020 25.99583 2.8728e-03 2.5855e-01 34 1.93460 e 40 13 7 4 10 0.05233 26.04816 2.8728e-03 2.6143e-01 34 1.93460 e 41 10 6 6 12 0.00180 26.04995 2.8728e-03 2.6430e-01 34 1.93460 e 42 8 12 4 10 0.03063 26.08059 2.8728e-03 2.6717e-01 34 1.93460 e 43 13 6 10 5 0.03668 26.11726 2.8728e-03 2.7005e-01 34 1.93460 e 44 12 5 6 11 0.02928 26.14654 2.8728e-03 2.7292e-01 34 1.93460 e 45 12 5 3 14 0.16146 26.30800 2.8728e-03 2.7579e-01 34 1.93460 e 46 7 4 6 17 0.16032 26.46832 2.8728e-03 2.7866e-01 34 1.93460 e 47 10 8 5 11 -0.00925 26.45907 2.8728e-03 2.8154e-01 34 1.93460 e 48 13 7 4 10 0.05233 26.51140 2.8728e-03 2.8441e-01 34 1.93460 e 49 6 8 12 8 -0.01965 26.49175 2.8728e-03 2.8728e-01 34 1.93460 e 50 10 7 6 11 -0.02244 26.46931 2.8728e-03 2.9016e-01 34 1.93460 e * rsequence = 26.46931 +/- 0.53866 bits/site