* genhis 1.80: generalized histogram data from * bits * Ri 2.71 * * Ri(b,l) table is from: ** rseq 5.39 rsequence calculated from encoded sequences from: ** encode 1.41; encoding of sequences in ** * 2003/11/18 21:35:49, 1995/12/04 06:41:55, t7.symmetry * * BOOK/INST sequences are from: * 2003/11/18 21:35:49, 1995/12/04 06:41:55, t7.symmetry * (* begin module t7.symmetry *) * * PARAMETERS FOR Ri: * -10 10 from-to * 1 column of value file * -2147483647.000000 2147483647.000000 lowest to highest Ri selected * -2147483647.000000 2147483647.000000 lowest to highest Value selected * not printing sequences to sequ * printing sequences to rixyin * -: whole line printed when partial site * using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2 * * i alignmenttype first, book, instructions * Lengths file: * empty * * data are from -50 to 50 * book/inst alignment is from -50 to 50 * Ri analysis is from -10 to 10 * * Columns: * 1 piece number * 2 piece name * 3 sequence region analyzed (if printed, - if not) * 4 length of region analyzed on this piece * 5 aligning coordinate on piece * 6 Rindividual for the piece * 7 value from the values file * 8 standard deviation of Rindividual for that sequence * * * parameters: * 6 is the data column used * 34 numbers are in the file * 9.57531 is the minimum number * 28.51782 is the maximum number * 20.67625 is the MEAN * 5.45496 is the STANDARD DEVIATION * 0.94959 is the STANDARD ERROR OF THE MEAN (SEM) * 29.75664 is the variance * 3.81924 is the uncertainty in bits * 4.49467 is the computed uncertainty in bits (Shannon p.57) * * -2.00000 to 40.00000 is the range of data plotted * 1.00000 is the x-axis interval * 43 is the number of intervals * 5 is the maximum y-axis value * 1.00000 is the y-axis scale * * gaussian standard plotted * * interval histogram * beginning value * -2.00000 0 -1.00000 0 0.00000 0 1.00000 0 2.00000 0 3.00000 0 4.00000 0 5.00000 0 6.00000 0 7.00000 0 8.00000 0 9.00000 1 + 10.00000 0 11.00000 0 : 12.00000 2 *+ 13.00000 1 * 14.00000 4 *+++ 15.00000 0 : 16.00000 1 +: 17.00000 2 +* 18.00000 2 +* 19.00000 1 +: 20.00000 2 +* 21.00000 5 +*+++ 22.00000 2 +* 23.00000 0 : 24.00000 2 +* 25.00000 1 +: 26.00000 2 *+ 27.00000 3 *++ 28.00000 3 *++ 29.00000 0 : 30.00000 0 31.00000 0 32.00000 0 33.00000 0 34.00000 0 35.00000 0 36.00000 0 37.00000 0 38.00000 0 39.00000 0 40.00000 0