**NEW**RNA Junction Database: A database of RNA structural elements including junctions, kissing loops, and bulges.
KNetFold: A webserver which predicts an RNA secondary structure from a sequence alignment.It uses compensatory base change information as well as energetic considerations to compute a structure. This algorithm is capable of predicting psuedoknots.
CorreLogo:A webserver that helps detect coreelated mutations in RNA and DNA sequence alignments. It generates what we call a "3D sequence logo." This is an extension of the "sequence logo" concept.
