If you would like to download one of our software packages you may do so here.

Available Software

• MPGAfold

• A massively parallel genetic algorithm that predicts RNA secondary structure.

Please note: To obtain a copy of this software contact Dr. Bruce A. Shapiro shapirbr@mail.nih.gov directly.

• MPGAfold Visualizer

• A Java application that allows the user to visually see an MPGAfold run.

Please note: To obtain a copy of this software contact Dr. Bruce A. Shapiro shapirbr@mail.nih.gov directly.

• CorreLogo - New, 2011

• A C++ application (sources and 64bin Linux binaries) for a stand-alone version of our CorreLogo server for the 3D sequence logos of RNA and DNA. [download]

• KNetFold

  • KNetFold is a new software for predicting the consensus secondary structure for a given alignment of RNA sequences. [download]

• RSMatch 2.0

• A package for comparing RNA structures via 1) pair-wise and DB searches; 2) multiple structure alignment with common structure computation; 3)iterative DB searches. [download]

• StructureLab - 2011 update

• An RNA workbench that assists in the 2D structure elucidation (with limited 3D capabilities). [download]

• RNA2D3D - 2010 update

• An interactive system for the conversion of RNA 2D structures to 3D and 3D modeling. [download]

• NanoTiler - 2010

• A Java application for the design of RNA nanoscale structures from building blocks. [download]

Note that not all of our software is available for download. If you cannot find the package you are looking for here. then contact shapirbr@mail.nih.gov.