Uses of Package
Seg2Dgel

Classes in Seg2Dgel used by Seg2Dgel

Seg2Dgel
The Seg2Dgel program is a 2D gel spot segmenter for the Open2Dprot project.

Sg2avg
Class sg2avg computes pixel neighborhood average for the 2D Gel Spot Segmenter.

Sg2bkg
Class Sg2bkg computes background density of the input gel image for the 2D gel spot segmenter.

Sg2cc
Class Sg2cc computes the pixel neighborhood central core (CC) for the 2D Gel Spot Segmenter from the averaged image (pix4).

Sg2data
Class sg2data splits large saturated or near saturated spots by Boundary, Run-Projection-Map (boundary) or Threshold methods for the 2D gel spot segmenter.

Sg2dbug
Class Sg2dbug contains debug print methods for image neighbohood, windows, etc.

Sg2draw
Class Sg2draw is used to draw overlay text, dots, plus and boundarys in segmented output images used by the Seg2Dgel.

Sg2drawHistogram
Class Sg2drawHistogram is used to draw an image intensity histogram

Sg2fbl
Class Sg2fbl specifies methods for manipulating the Final Blob List (FBL) used by the 2D gel spot segmenter.

Sg2fnd
Class Sg2fnd finds the next spot for the 2D Gel Spot segmenter using a 4-neighbor definition of a spot.

Sg2glb
Class Sg2glb is the base class that specifies global variables used by all of the other Seg2Dgel 2D gel segmenter classes.

Sg2hash
Class Sg2hash specifies the picture hash table used by the 2D gel spot segmenter.

Sg2ini
Class sg2ini initializes data structures for the 2D Gel Spot Segmenter

Sg2ngh
Class Sg2ngh gets neighborhhod data and gaussian filter neighborhood data for 3x3, 5x5, 7x7, 13x13(17) size neighbohhoods.

Sg2notch
Class Sg2notch performs a spot boundary notch analysis for the 2D gel segmenter.

Sg2reportPopup
Class Sg2reportPopup creates and displays scrollable string text area in a popup window.

Sg2rest
Class Sg2rest computes the remainder or the Rest-of-image = (Original - segmented) used by the 2D Gel Spot Segmenter.

Sg2sat
Class Sg2sat is used to propagate CC's for saturated average gray value pixels used by the 2D gel spot segmenter.

Sg2showImage
Class Sg2showImage implements a popup GUI to show images used in the 2D Gel Spot Segmenter.

Sg2split
Class sg2split splits large saturated or near saturated spots by Boundary, Run-Projection-Map (RLM boundary) or Threshold for the 2D gel segmenter.

Sg2viewImage
Class Sg2viewImage implements a popup GUI to show images used in the 2D Gel Spot Segmenter and an associated histogram GUI.

Sg2wrk
Class Sg2wrk specifies WorkingStack used by the 2D gel segmenter in blob finding.