<?xml version="1.0" encoding="UTF-8"?>
<!-- Open2Dprot-SSF.dtd Version 1.4 -->
<!ELEMENT Background_FilterSize (#PCDATA)>
<!ELEMENT Density_units (#PCDATA)>
<!ELEMENT Global_segmenter_statistics (total_D_spots_accepted, total_densityPrime_spots_accepted, total_omitted_densityPrime_spots_accepted, PctOmittedToDprimeAcceptedSpots, Nbr_Spots_Failing_Area_Sizing)>
<!ELEMENT Nbr_Spots_Failing_Area_Sizing (nbr_below_t1Area_thr, nbr_above_t2Area_thr, nbr_below_t1Density_thr, nbr_above_t2Density_thr, nbr_below_t1Range_thr, nbr_above_t2Range_thr)>
<!ELEMENT Open2Dprot_SSF_Version (#PCDATA)>
<!ELEMENT PctOmittedToDprimeAcceptedSpots (#PCDATA)>
<!ELEMENT Percent_saturation_threshold (#PCDATA)>
<!ELEMENT Pix_Height (#PCDATA)>
<!ELEMENT Pix_Width (#PCDATA)>
<!ELEMENT Project_directory (#PCDATA)>
<!ELEMENT Sample_Name (#PCDATA)>
<!ELEMENT Sample_parameters (Sample_Name, Simple_FileName, Project_directory, date, Open2Dprot_SSF_Version, cwx1, cwx2, cwy1, cwy2, Pix_Height, Pix_Width, t1Area_threshold, t2Area_threshold, t1Density_threshold, t2Density_threshold, t1Range_threshold, t2Range_threshold, Percent_saturation_threshold, ccMinSize_threshold, Density_units, Background_FilterSize)>
<!ELEMENT Simple_FileName (#PCDATA)>
<!ELEMENT Spot (id, area, intensity, normalised_volume, volume, pixel_x_coord, pixel_y_coord, local_background, minDensity, maxDensity, meanDensity, meanBackground, merX1, merX2, merY1, merY2, sxTot, syTot, sxyTot, ccNumber, spotBoundaryStr)>
<!ELEMENT Spot_Segmentation (Sample_parameters, Spot+, Global_segmenter_statistics)>
<!ELEMENT area (#PCDATA)>
<!ELEMENT ccMinSize_threshold (#PCDATA)>
<!ELEMENT ccNumber (#PCDATA)>
<!ELEMENT cwx1 (#PCDATA)>
<!ELEMENT cwx2 (#PCDATA)>
<!ELEMENT cwy1 (#PCDATA)>
<!ELEMENT cwy2 (#PCDATA)>
<!ELEMENT date (#PCDATA)>
<!ELEMENT density (#PCDATA)>
<!ELEMENT densityPrime (#PCDATA)>
<!ELEMENT id (#PCDATA)>
<!ELEMENT intensity (#PCDATA)>
<!ELEMENT local_background (#PCDATA)>
<!ELEMENT maxDensity (#PCDATA)>
<!ELEMENT meanBackground (#PCDATA)>
<!ELEMENT meanDensity (#PCDATA)>
<!ELEMENT merX1 (#PCDATA)>
<!ELEMENT merX2 (#PCDATA)>
<!ELEMENT merY1 (#PCDATA)>
<!ELEMENT merY2 (#PCDATA)>
<!ELEMENT minDensity (#PCDATA)>
<!ELEMENT nbr (#PCDATA)>
<!ELEMENT nbr_above_t2Area_thr (#PCDATA)>
<!ELEMENT nbr_above_t2Density_thr (#PCDATA)>
<!ELEMENT nbr_above_t2Range_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Area_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Density_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Range_thr (#PCDATA)>
<!ELEMENT normalised_volume (#PCDATA)>
<!ELEMENT pixel_x_coord (#PCDATA)>
<!ELEMENT pixel_y_coord (#PCDATA)>
<!ELEMENT spotBoundaryStr (#PCDATA)>
<!ELEMENT sxTot (#PCDATA)>
<!ELEMENT sxyTot (#PCDATA)>
<!ELEMENT syTot (#PCDATA)>
<!ELEMENT t1Area_threshold (#PCDATA)>
<!ELEMENT t1Density_threshold (#PCDATA)>
<!ELEMENT t1Range_threshold (#PCDATA)>
<!ELEMENT t2Area_threshold (#PCDATA)>
<!ELEMENT t2Density_threshold (#PCDATA)>
<!ELEMENT t2Range_threshold (#PCDATA)>
<!ELEMENT total_D_spots_accepted (nbr, density, area)>
<!ELEMENT total_densityPrime_spots_accepted (nbr, densityPrime, area)>
<!ELEMENT total_omitted_densityPrime_spots_accepted (nbr, densityPrime, area)>
<!ELEMENT volume (#PCDATA)>

