<?xml version="1.0" encoding="UTF-8"?>
<!-- Open2Dprot-SPF.dtd Version 1.5 -->
<!ELEMENT DL (#PCDATA)>
<!ELEMENT DP (#PCDATA)>
<!ELEMENT Global_Spot_pairing_statistics (NbrRsampleSpotsInLMS, NbrSampleSpotsInLMS, Landmark_set_sizes, InitialpairingStats, SecondarypairingStats, Primary_SP_PP_pairRate, Secondary_SP_PP_pairRate, meanDP_SP_PP, meanDPprime_SP_PP)>
<!ELEMENT InitialpairingStats (Nbr_US_spotsPri, Nbr_SP_spotsPri, Nbr_PP_spotsPri, Nbr_AP_spotsPri, Nbr_CP_spotsPri, Nbr_EP_spotsPri)>
<!ELEMENT Landmark (Landmark_name, Landmark_nbr, Nbr_Rsample_spots, Nbr_Sample_spots)>
<!ELEMENT LandmarkSet (#PCDATA)>
<!ELEMENT Landmark_name (#PCDATA)>
<!ELEMENT Landmark_nbr (#PCDATA)>
<!ELEMENT Landmark_set_sizes (Landmark+)>
<!ELEMENT NbrRsampleSpotsInLMS (#PCDATA)>
<!ELEMENT NbrSampleSpotsInLMS (#PCDATA)>
<!ELEMENT NbrSpots (#PCDATA)>
<!ELEMENT NbrSpotsOmitted (#PCDATA)>
<!ELEMENT NbrSpotsPrime (#PCDATA)>
<!ELEMENT Nbr_AP_spotsPri (#PCDATA)>
<!ELEMENT Nbr_AP_spotsSec (#PCDATA)>
<!ELEMENT Nbr_CP_spotsPri (#PCDATA)>
<!ELEMENT Nbr_CP_spotsSec (#PCDATA)>
<!ELEMENT Nbr_EP_spotsPri (#PCDATA)>
<!ELEMENT Nbr_EP_spotsSec (#PCDATA)>
<!ELEMENT Nbr_PP_spotsPri (#PCDATA)>
<!ELEMENT Nbr_PP_spotsSec (#PCDATA)>
<!ELEMENT Nbr_Rsample_spots (#PCDATA)>
<!ELEMENT Nbr_SP_spotsPri (#PCDATA)>
<!ELEMENT Nbr_SP_spotsSec (#PCDATA)>
<!ELEMENT Nbr_Sample_spots (#PCDATA)>
<!ELEMENT Nbr_Spots_Failing_Area_Sizing (nbr_below_t1Area_thr, nbr_above_t2Area_thr, nbr_below_t1Density_thr, nbr_above_t2Density_thr, nbr_below_t1Range_thr, nbr_above_t2Range_thr)>
<!ELEMENT Nbr_US_spotsPri (#PCDATA)>
<!ELEMENT Nbr_US_spotsSec (#PCDATA)>
<!ELEMENT Open2Dprot_SPF_Version (#PCDATA)>
<!ELEMENT Paired_Spot (LandmarkSet, R_spotNbr, R_dxLM, R_dyLM, R_xC, R_yC, R_merX1, R_merX2, R_merY1, R_merY2, S_spotNbr, S_dxLM, S_dyLM, S_xC, S_yC, S_merX1, S_merX2, S_merY1, S_merY2, PairingCode, DP, DL, R_area, S_area, R_dens, S_dens, R_dPrime, S_dPrime, R_volume, S_volume, R_MaxDens, S_MaxDens, R_MinDens, S_MinDens, R_MeanBkgDens, S_MeanBkgDens, R_stdDev_X, R_stdDev_Y, S_stdDev_X, S_stdDev_Y)>
<!ELEMENT PairingCode (#PCDATA)>
<!ELEMENT Pairing_parameters (date, Open2Dprot_SPF_Version, Project_directory, Sample_Pairs_File, thrSP_threshold, thrPP_threshold, nbrAltLandmarks, nbrLandmarks, Rsample, Sample)>
<!ELEMENT PctOmittedToDprimeAcceptedSpots (#PCDATA)>
<!ELEMENT Pix_Height (#PCDATA)>
<!ELEMENT Pix_Width (#PCDATA)>
<!ELEMENT PixelSizeMicrons (#PCDATA)>
<!ELEMENT Primary_SP_PP_pairRate (#PCDATA)>
<!ELEMENT Project_directory (#PCDATA)>
<!ELEMENT R_MaxDens (#PCDATA)>
<!ELEMENT R_MeanBkgDens (#PCDATA)>
<!ELEMENT R_MinDens (#PCDATA)>
<!ELEMENT R_area (#PCDATA)>
<!ELEMENT R_dPrime (#PCDATA)>
<!ELEMENT R_dens (#PCDATA)>
<!ELEMENT R_dxLM (#PCDATA)>
<!ELEMENT R_dyLM (#PCDATA)>
<!ELEMENT R_merX1 (#PCDATA)>
<!ELEMENT R_merX2 (#PCDATA)>
<!ELEMENT R_merY1 (#PCDATA)>
<!ELEMENT R_merY2 (#PCDATA)>
<!ELEMENT R_spotNbr (#PCDATA)>
<!ELEMENT R_stdDev_X (#PCDATA)>
<!ELEMENT R_stdDev_Y (#PCDATA)>
<!ELEMENT R_volume (#PCDATA)>
<!ELEMENT R_xC (#PCDATA)>
<!ELEMENT R_yC (#PCDATA)>
<!ELEMENT Rsample (Sample_Type, Sample_Name, Simple_FileName, Sample_Pix_FileName, Sample_SSF_FileName, cwx1, cwx2, cwy1, cwy2, Pix_Height, Pix_Width, PixelSizeMicrons, NbrSpots, NbrSpotsPrime, NbrSpotsOmitted, TotSampleDensity, TotSampleDensityPrime, TotOmittedDensity, TotSampleArea, TotSampleAreaPrime, TotSampleAreaOmitted, PctOmittedToDprimeAcceptedSpots, Nbr_Spots_Failing_Area_Sizing)>
<!ELEMENT S_MaxDens (#PCDATA)>
<!ELEMENT S_MeanBkgDens (#PCDATA)>
<!ELEMENT S_MinDens (#PCDATA)>
<!ELEMENT S_area (#PCDATA)>
<!ELEMENT S_dPrime (#PCDATA)>
<!ELEMENT S_dens (#PCDATA)>
<!ELEMENT S_dxLM (#PCDATA)>
<!ELEMENT S_dyLM (#PCDATA)>
<!ELEMENT S_merX1 (#PCDATA)>
<!ELEMENT S_merX2 (#PCDATA)>
<!ELEMENT S_merY1 (#PCDATA)>
<!ELEMENT S_merY2 (#PCDATA)>
<!ELEMENT S_spotNbr (#PCDATA)>
<!ELEMENT S_stdDev_X (#PCDATA)>
<!ELEMENT S_stdDev_Y (#PCDATA)>
<!ELEMENT S_volume (#PCDATA)>
<!ELEMENT S_xC (#PCDATA)>
<!ELEMENT S_yC (#PCDATA)>
<!ELEMENT Sample (Sample_Type, Sample_Name, Simple_FileName, Sample_Pix_FileName, Sample_SSF_FileName, cwx1, cwx2, cwy1, cwy2, Pix_Height, Pix_Width, PixelSizeMicrons, NbrSpots, NbrSpotsPrime, NbrSpotsOmitted, TotSampleDensity, TotSampleDensityPrime, TotOmittedDensity, TotSampleArea, TotSampleAreaPrime, TotSampleAreaOmitted, PctOmittedToDprimeAcceptedSpots, Nbr_Spots_Failing_Area_Sizing)>
<!ELEMENT Sample_Name (#PCDATA)>
<!ELEMENT Sample_Pairs_File (#PCDATA)>
<!ELEMENT Sample_Pix_FileName (#PCDATA)>
<!ELEMENT Sample_SSF_FileName (#PCDATA)>
<!ELEMENT Sample_Type (#PCDATA)>
<!ELEMENT Secondary_SP_PP_pairRate (#PCDATA)>
<!ELEMENT SecondarypairingStats (Nbr_US_spotsSec, Nbr_SP_spotsSec, Nbr_PP_spotsSec, Nbr_AP_spotsSec, Nbr_CP_spotsSec, Nbr_EP_spotsSec)>
<!ELEMENT Simple_FileName (#PCDATA)>
<!ELEMENT SpotList_Pairing (Pairing_parameters, Paired_Spot+, Global_Spot_pairing_statistics)>
<!ELEMENT TotOmittedDensity (#PCDATA)>
<!ELEMENT TotSampleArea (#PCDATA)>
<!ELEMENT TotSampleAreaOmitted (#PCDATA)>
<!ELEMENT TotSampleAreaPrime (#PCDATA)>
<!ELEMENT TotSampleDensity (#PCDATA)>
<!ELEMENT TotSampleDensityPrime (#PCDATA)>
<!ELEMENT cwx1 (#PCDATA)>
<!ELEMENT cwx2 (#PCDATA)>
<!ELEMENT cwy1 (#PCDATA)>
<!ELEMENT cwy2 (#PCDATA)>
<!ELEMENT date (#PCDATA)>
<!ELEMENT meanDP_SP_PP (#PCDATA)>
<!ELEMENT meanDPprime_SP_PP (#PCDATA)>
<!ELEMENT nbrAltLandmarks (#PCDATA)>
<!ELEMENT nbrLandmarks (#PCDATA)>
<!ELEMENT nbr_above_t2Area_thr (#PCDATA)>
<!ELEMENT nbr_above_t2Density_thr (#PCDATA)>
<!ELEMENT nbr_above_t2Range_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Area_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Density_thr (#PCDATA)>
<!ELEMENT nbr_below_t1Range_thr (#PCDATA)>
<!ELEMENT thrPP_threshold (#PCDATA)>
<!ELEMENT thrSP_threshold (#PCDATA)>

