Class PseudoArray

java.lang.Object
  |
  +--PseudoArray

public class PseudoArray

extends java.lang.Object

This class generates a pseudo array from maxRowsExpected of spots. It assumes ONE field (i.e. no duplicate grids). The results are left in: (maxRowsComputed, maxGrids, maxGridRows, maxGridCols).

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file.

Version:

$Date: 2002/10/14 19:22:31 $ $Revision: 1.4 $

Author:

P. Lemkin (NCI), G. Thornwall (SAIC), B. Stephens(SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home

Field Summary

int	maxGridCols RTN: # estimated columns/grid
int	maxGridRows RTN: # estimated rows/grid
int	maxGrids RTN: # estimated grids/field
int	maxRowsComputed RTN: final #rows computed for new max[G,R,C]
int	maxRowsExpected ARG: initial # of rows specified
static int	OPT_GRID_SIZE Optimal grid size for MAExplorer viewing
static double	ROWS_TO_COLS_ASPECT_RATIO desired rows/cols aspect aspect for a grid

Constructor Summary

(package private)

PseudoArray(int maxRowsExpected) PseudoArray() - compute a reasonable PseudoArray geometry such that we can visualize it easily with MAExplorer without it hogging the whole screen.

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Field Detail

OPT_GRID_SIZE

public static final int OPT_GRID_SIZE

Optimal grid size for MAExplorer viewing

ROWS_TO_COLS_ASPECT_RATIO

public static final double ROWS_TO_COLS_ASPECT_RATIO

desired rows/cols aspect aspect for a grid

maxRowsExpected

public int maxRowsExpected

ARG: initial # of rows specified

maxRowsComputed

public int maxRowsComputed

RTN: final #rows computed for new max[G,R,C]

maxGrids

public int maxGrids

RTN: # estimated grids/field

maxGridRows

public int maxGridRows

RTN: # estimated rows/grid

maxGridCols

public int maxGridCols

RTN: # estimated columns/grid

Constructor Detail

PseudoArray

PseudoArray(int maxRowsExpected)

PseudoArray() - compute a reasonable PseudoArray geometry such that we can visualize it easily with MAExplorer without it hogging the whole screen. We do not want too many grids or with # cols too large. A maximum size of about 40 columns/grid is ok.

Parameters:

maxRowsExpected - is the total # of spots in the array