Class ImageAnalysisMethod

java.lang.Object
  |
  +--ImageAnalysisMethod

public class ImageAnalysisMethod

extends java.lang.Object

This class specifies segmentation software tool used in quantifying the image spot data. This information may be needed in disecting the input file.

This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file.

Version:

$Date: 2002/10/14 19:22:30 $ $Revision: 1.4 $

Author:

P. Lemkin (NCI), G. Thornwall (SAIC), B. Stephens(SAIC), NCI-Frederick, Frederick, MD

See Also:

MAExplorer Home

Field Summary

static java.lang.String	COMMA_DELIM_FMT Comma-Delim string
(package private) java.lang.String	format "tab-delimited", "comma-delimited", "XML"
(package private) java.lang.String	multHPsPerFile "single" or "multiple"
(package private) java.lang.String	plateCoding how the plates are encoded on the array
(package private) java.lang.String	quantTool analysis program name; may be "N.A."
(package private) java.lang.String	spotCoding how the spots are encoded on the array
static java.lang.String	TAB_DELIM_FMT Tab-Delim string
(package private) java.lang.String	vendor vendor who supplies the quantification tool
(package private) java.lang.String	versionQT of quantTool; may be "N.A."
static java.lang.String	XML_FMT XML string

Constructor Summary

(package private)

ImageAnalysisMethod(java.lang.String vendor, java.lang.String quantTool, java.lang.String versionQT, java.lang.String format, java.lang.String spotCoding, java.lang.String plateCoding, java.lang.String multHPsPerFile) ImageAnalysisMethod() - constructor

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Field Detail

TAB_DELIM_FMT

public static final java.lang.String TAB_DELIM_FMT

Tab-Delim string

COMMA_DELIM_FMT

public static final java.lang.String COMMA_DELIM_FMT

Comma-Delim string

XML_FMT

public static final java.lang.String XML_FMT

XML string

vendor

java.lang.String vendor

vendor who supplies the quantification tool

quantTool

java.lang.String quantTool

analysis program name; may be "N.A."

versionQT

java.lang.String versionQT

of quantTool; may be "N.A."

format

java.lang.String format

"tab-delimited", "comma-delimited", "XML"

spotCoding

java.lang.String spotCoding

how the spots are encoded on the array

plateCoding

java.lang.String plateCoding

how the plates are encoded on the array

multHPsPerFile

java.lang.String multHPsPerFile

"single" or "multiple"

Constructor Detail

ImageAnalysisMethod

ImageAnalysisMethod(java.lang.String vendor,
                    java.lang.String quantTool,
                    java.lang.String versionQT,
                    java.lang.String format,
                    java.lang.String spotCoding,
                    java.lang.String plateCoding,
                    java.lang.String multHPsPerFile)

ImageAnalysisMethod() - constructor

Parameters:

vendor - vendor who supplies the quantification tool

quantTool - analysis program name; may be "N.A."

versionQT - of quantTool; may be "N.A."

format - "tab-delimited", "comma-delimited", "XML"

spotCoding - how the spots are encoded on the array

plateCoding - how the plates are encoded on the array

multHPsPerFile - "single" or "multiple"